Download tissue networks and gold standards

All networks are available as gzipped, tab-delimited text files. The file format is as follows:

        	Top Edges: the network is filtered to only include edges with evidence supporting a tissue-specific functional interaction
        	[entrez gene id 1][entrez gene id 2][posterior prob.]

        	Full Network: the network is fully connected 
        	[entrez gene id 1][entrez gene id 2][posterior prob., with known edges set to 1][posterior prob.]

                Gold Standard: each file (e.g. kidney.dat) contains edges with values 1 through 4 corresponding 
		to C1 - C4 described in our paper. C1 edges are used as positives and C2-C4 are used as negatives 
		to train the tissue-specific models.
    	

Note: These downloadable networks assume a prior probability of 0.1 to match the displayed networks

TissueTop EdgesFull NetworkGold Standard
adipose tissueadipose_tissue_top.gzadipose_tissue.gz adipose_tissue.dat
adrenal cortexadrenal_cortex_top.gzadrenal_cortex.gz adrenal_cortex.dat
adrenal glandadrenal_gland_top.gzadrenal_gland.gz adrenal_gland.dat
all tissuesall_tissues_top.gzall_tissues.gz
amygdalaamygdala_top.gzamygdala.gz amygdala.dat
aortaaorta_top.gzaorta.gz aorta.dat
arteryartery_top.gzartery.gz artery.dat
astrocyteastrocyte_top.gzastrocyte.gz astrocyte.dat
b lymphocyteb_lymphocyte_top.gzb_lymphocyte.gz b_lymphocyte.dat
basal ganglionbasal_ganglion_top.gzbasal_ganglion.gz basal_ganglion.dat
basophilbasophil_top.gzbasophil.gz basophil.dat
bloodblood_top.gzblood.gz blood.dat
blood plasmablood_plasma_top.gzblood_plasma.gz blood_plasma.dat
blood plateletblood_platelet_top.gzblood_platelet.gz blood_platelet.dat
blood vesselblood_vessel_top.gzblood_vessel.gz blood_vessel.dat
bonebone_top.gzbone.gz bone.dat
bone marrowbone_marrow_top.gzbone_marrow.gz bone_marrow.dat
brainbrain_top.gzbrain.gz brain.dat
bronchial epithelial cellbronchial_epithelial_cell_top.gzbronchial_epithelial_cell.gz bronchial_epithelial_cell.dat
bronchusbronchus_top.gzbronchus.gz bronchus.dat
cardiac musclecardiac_muscle_top.gzcardiac_muscle.gz cardiac_muscle.dat
cartilagecartilage_top.gzcartilage.gz cartilage.dat
caudate nucleuscaudate_nucleus_top.gzcaudate_nucleus.gz caudate_nucleus.dat
caudate putamencaudate_putamen_top.gzcaudate_putamen.gz caudate_putamen.dat
cecumcecum_top.gzcecum.gz cecum.dat
central nervous systemcentral_nervous_system_top.gzcentral_nervous_system.gz central_nervous_system.dat
cerebellar cortexcerebellar_cortex_top.gzcerebellar_cortex.gz cerebellar_cortex.dat
cerebellumcerebellum_top.gzcerebellum.gz cerebellum.dat
cerebral cortexcerebral_cortex_top.gzcerebral_cortex.gz cerebral_cortex.dat
chondrocytechondrocyte_top.gzchondrocyte.gz chondrocyte.dat
choroidchoroid_top.gzchoroid.gz choroid.dat
cochleacochlea_top.gzcochlea.gz cochlea.dat
coloncolon_top.gzcolon.gz colon.dat
corneacornea_top.gzcornea.gz cornea.dat
corpus callosumcorpus_callosum_top.gzcorpus_callosum.gz corpus_callosum.dat
corpus luteumcorpus_luteum_top.gzcorpus_luteum.gz corpus_luteum.dat
corpus striatumcorpus_striatum_top.gzcorpus_striatum.gz corpus_striatum.dat
culture condition cd8 cellculture_condition_cd8_cell_top.gzculture_condition_cd8_cell.gz culture_condition_cd8_cell.dat
dendritic celldendritic_cell_top.gzdendritic_cell.gz dendritic_cell.dat
dentate gyrusdentate_gyrus_top.gzdentate_gyrus.gz dentate_gyrus.dat
diencephalondiencephalon_top.gzdiencephalon.gz diencephalon.dat
duodenumduodenum_top.gzduodenum.gz duodenum.dat
earear_top.gzear.gz ear.dat
embryoembryo_top.gzembryo.gz embryo.dat
eosinophileosinophil_top.gzeosinophil.gz eosinophil.dat
epidermisepidermis_top.gzepidermis.gz epidermis.dat
esophagusesophagus_top.gzesophagus.gz esophagus.dat
eyeeye_top.gzeye.gz eye.dat
fetusfetus_top.gzfetus.gz fetus.dat
forebrainforebrain_top.gzforebrain.gz forebrain.dat
frontal lobefrontal_lobe_top.gzfrontal_lobe.gz frontal_lobe.dat
gastrointestinal tractgastrointestinal_tract_top.gzgastrointestinal_tract.gz gastrointestinal_tract.dat
gliaglia_top.gzglia.gz glia.dat
granulocytegranulocyte_top.gzgranulocyte.gz granulocyte.dat
hair folliclehair_follicle_top.gzhair_follicle.gz hair_follicle.dat
heartheart_top.gzheart.gz heart.dat
hematopoietic stem cellhematopoietic_stem_cell_top.gzhematopoietic_stem_cell.gz hematopoietic_stem_cell.dat
hepatocytehepatocyte_top.gzhepatocyte.gz hepatocyte.dat
hippocampushippocampus_top.gzhippocampus.gz hippocampus.dat
hypophysishypophysis_top.gzhypophysis.gz hypophysis.dat
hypothalamushypothalamus_top.gzhypothalamus.gz hypothalamus.dat
ileumileum_top.gzileum.gz ileum.dat
intestineintestine_top.gzintestine.gz intestine.dat
jejunumjejunum_top.gzjejunum.gz jejunum.dat
keratinocytekeratinocyte_top.gzkeratinocyte.gz keratinocyte.dat
kidneykidney_top.gzkidney.gz kidney.dat
large intestinelarge_intestine_top.gzlarge_intestine.gz large_intestine.dat
lenslens_top.gzlens.gz lens.dat
leukocyteleukocyte_top.gzleukocyte.gz leukocyte.dat
liverliver_top.gzliver.gz liver.dat
locus ceruleuslocus_ceruleus_top.gzlocus_ceruleus.gz locus_ceruleus.dat
lunglung_top.gzlung.gz lung.dat
lymph nodelymph_node_top.gzlymph_node.gz lymph_node.dat
lymphocytelymphocyte_top.gzlymphocyte.gz lymphocyte.dat
macrophagemacrophage_top.gzmacrophage.gz macrophage.dat
mammary epitheliummammary_epithelium_top.gzmammary_epithelium.gz mammary_epithelium.dat
mammary glandmammary_gland_top.gzmammary_gland.gz mammary_gland.dat
mast cellmast_cell_top.gzmast_cell.gz mast_cell.dat
medulla oblongatamedulla_oblongata_top.gzmedulla_oblongata.gz medulla_oblongata.dat
megakaryocytemegakaryocyte_top.gzmegakaryocyte.gz megakaryocyte.dat
midbrainmidbrain_top.gzmidbrain.gz midbrain.dat
monocytemonocyte_top.gzmonocyte.gz monocyte.dat
mononuclear phagocytemononuclear_phagocyte_top.gzmononuclear_phagocyte.gz mononuclear_phagocyte.dat
musclemuscle_top.gzmuscle.gz muscle.dat
myometriummyometrium_top.gzmyometrium.gz myometrium.dat
natural killer cellnatural_killer_cell_top.gznatural_killer_cell.gz natural_killer_cell.dat
nephronnephron_top.gznephron.gz nephron.dat
nervous systemnervous_system_top.gznervous_system.gz nervous_system.dat
neuronneuron_top.gzneuron.gz neuron.dat
neutrophilneutrophil_top.gzneutrophil.gz neutrophil.dat
nucleus accumbensnucleus_accumbens_top.gznucleus_accumbens.gz nucleus_accumbens.dat
occipital lobeoccipital_lobe_top.gzoccipital_lobe.gz occipital_lobe.dat
occipital poleoccipital_pole_top.gzoccipital_pole.gz occipital_pole.dat
osteoblastosteoblast_top.gzosteoblast.gz osteoblast.dat
ovarian follicleovarian_follicle_top.gzovarian_follicle.gz ovarian_follicle.dat
ovaryovary_top.gzovary.gz ovary.dat
oviductoviduct_top.gzoviduct.gz oviduct.dat
pancreaspancreas_top.gzpancreas.gz pancreas.dat
pancreatic isletpancreatic_islet_top.gzpancreatic_islet.gz pancreatic_islet.dat
parietal lobeparietal_lobe_top.gzparietal_lobe.gz parietal_lobe.dat
peripheral nervous systemperipheral_nervous_system_top.gzperipheral_nervous_system.gz peripheral_nervous_system.dat
placentaplacenta_top.gzplacenta.gz placenta.dat
podocytepodocyte_top.gzpodocyte.gz podocyte.dat
ponspons_top.gzpons.gz pons.dat
prostate glandprostate_gland_top.gzprostate_gland.gz prostate_gland.dat
renal glomerulusrenal_glomerulus_top.gzrenal_glomerulus.gz renal_glomerulus.dat
renal tubulerenal_tubule_top.gzrenal_tubule.gz renal_tubule.dat
retinaretina_top.gzretina.gz retina.dat
salivary glandsalivary_gland_top.gzsalivary_gland.gz salivary_gland.dat
serumserum_top.gzserum.gz serum.dat
skeletal muscleskeletal_muscle_top.gzskeletal_muscle.gz skeletal_muscle.dat
skinskin_top.gzskin.gz skin.dat
skin fibroblastskin_fibroblast_top.gzskin_fibroblast.gz skin_fibroblast.dat
small intestinesmall_intestine_top.gzsmall_intestine.gz small_intestine.dat
smooth musclesmooth_muscle_top.gzsmooth_muscle.gz smooth_muscle.dat
spermatidspermatid_top.gzspermatid.gz spermatid.dat
spermatocytespermatocyte_top.gzspermatocyte.gz spermatocyte.dat
spermatogoniumspermatogonium_top.gzspermatogonium.gz spermatogonium.dat
spinal cordspinal_cord_top.gzspinal_cord.gz spinal_cord.dat
spleenspleen_top.gzspleen.gz spleen.dat
stomachstomach_top.gzstomach.gz stomach.dat
substantia nigrasubstantia_nigra_top.gzsubstantia_nigra.gz substantia_nigra.dat
subthalamic nucleussubthalamic_nucleus_top.gzsubthalamic_nucleus.gz subthalamic_nucleus.dat
t lymphocytet_lymphocyte_top.gzt_lymphocyte.gz t_lymphocyte.dat
tear glandtear_gland_top.gztear_gland.gz tear_gland.dat
telencephalontelencephalon_top.gztelencephalon.gz telencephalon.dat
temporal lobetemporal_lobe_top.gztemporal_lobe.gz temporal_lobe.dat
testistestis_top.gztestis.gz testis.dat
thalamusthalamus_top.gzthalamus.gz thalamus.dat
thymocytethymocyte_top.gzthymocyte.gz thymocyte.dat
thyroid glandthyroid_gland_top.gzthyroid_gland.gz thyroid_gland.dat
tonsiltonsil_top.gztonsil.gz tonsil.dat
toothtooth_top.gztooth.gz tooth.dat
tracheatrachea_top.gztrachea.gz trachea.dat
trophoblasttrophoblast_top.gztrophoblast.gz trophoblast.dat
umbilical cordumbilical_cord_top.gzumbilical_cord.gz umbilical_cord.dat
umbilical vein endothelial cellumbilical_vein_endothelial_cell_top.gzumbilical_vein_endothelial_cell.gz umbilical_vein_endothelial_cell.dat
urinary bladderurinary_bladder_top.gzurinary_bladder.gz urinary_bladder.dat
uroepitheliumuroepithelium_top.gzuroepithelium.gz uroepithelium.dat
uterine cervixuterine_cervix_top.gzuterine_cervix.gz uterine_cervix.dat
uterine endometriumuterine_endometrium_top.gzuterine_endometrium.gz uterine_endometrium.dat
uterusuterus_top.gzuterus.gz uterus.dat
vascular endothelial cellvascular_endothelial_cell_top.gzvascular_endothelial_cell.gz vascular_endothelial_cell.dat
vascular endotheliumvascular_endothelium_top.gzvascular_endothelium.gz vascular_endothelium.dat
vermiform appendixvermiform_appendix_top.gzvermiform_appendix.gz vermiform_appendix.dat